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OmicsLogic | Bioinformatics & Data Science

@omics_logic

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We offer bioinformatics and data science #training & #internships, #research services 📧[email protected]. All our services in one click👇

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Digital pathology is transforming how we diagnose, quantify biomarkers, and extract clinically meaningful patterns from tissue images. But where do you start?

This visual roadmap walks you through the complete digital pathway to diagnosis - from sample preparation and whole-slide imaging to annotation, computational analysis, and reporting. If you're ready to move from theory to hands-on practice, this is your opportunity.

To translate these concepts into real, hands-on skills, we’re hosting:

🧬 𝟐-𝐖𝐞𝐞𝐤𝐞𝐧𝐝 𝐇𝐚𝐧𝐝𝐬-𝐎𝐧 𝐎𝐧𝐥𝐢𝐧𝐞 𝐖𝐨𝐫𝐤𝐬𝐡𝐨𝐩: 𝐀𝐩𝐩𝐥𝐢𝐞𝐝 𝐂𝐨𝐦𝐩𝐮𝐭𝐚𝐭𝐢𝐨𝐧𝐚𝐥 𝐏𝐚𝐭𝐡𝐨𝐥𝐨𝐠𝐲: 𝐇𝐚𝐧𝐝𝐬-𝐎𝐧 𝐈𝐦𝐚𝐠𝐞 𝐀𝐧𝐚𝐥𝐲𝐬𝐢𝐬, 𝐁𝐢𝐨𝐦𝐚𝐫𝐤𝐞𝐫 𝐒𝐜𝐨𝐫𝐢𝐧𝐠 & 𝐌𝐋

OmicsLogic and MedAIQ bring you a practical, research-ready workshop designed to help participants transform H&E, IHC, and IF whole slide images (WSI) into quantitative, reproducible insights using Python-based digital pathology workflows in Google Colab.

Over three live sessions across two weekends, participants work through the complete image analysis pipeline: WSI handling and slide QC, stain separation and normalization, segmentation, deep-learning cell detection with Cellpose, biomarker scoring (Ki-67, ER/PR, H-score), and machine learning for tissue classification and spatial analysis.

Between the weekends, you apply what you've learned to a guided mini-project, then present it at a Project Clinic for expert feedback from the mentor. You leave with a portfolio-ready project and a clear path to grow it into publishable research.

🔗 𝐑𝐞𝐠𝐢𝐬𝐭𝐞𝐫 𝐡𝐞𝐫𝐞: https://forms.gle/3qfa5XhLnKUFHy4LA

🔄 Share this with your friends, colleagues, and peers who may be interested in computational pathology and AI-ready digital slide analysis.

#ComputationalPathology #DigitalPathology #AIinHealthcare #Bioinformatics #ImageAnalysis #Python #MachineLearning by @omics_logic

𝟒-𝐃𝐚𝐲 𝐇𝐚𝐧𝐝𝐬-𝐎𝐧 𝐎𝐧𝐥𝐢𝐧𝐞 𝐖𝐨𝐫𝐤𝐬𝐡𝐨𝐩: 𝐏𝐚𝐧-𝐆𝐞𝐧𝐨𝐦𝐞 𝐀𝐧𝐚𝐥𝐲𝐬𝐢𝐬 (𝐁𝐚𝐜𝐭𝐞𝐫𝐢𝐚𝐥 𝐖𝐡𝐨𝐥𝐞 𝐆𝐞𝐧𝐨𝐦𝐞 𝐒𝐞𝐪𝐮𝐞𝐧𝐜𝐢𝐧𝐠, 𝐀𝐧𝐭𝐢𝐦𝐢𝐜𝐫𝐨𝐛𝐢𝐚𝐥 𝐑𝐞𝐬𝐢𝐬𝐭𝐚𝐧𝐜𝐞, 𝐂𝐥𝐢𝐧𝐢𝐜𝐚𝐥 𝐃𝐢𝐚𝐠𝐧𝐨𝐬𝐭𝐢𝐜𝐬) 🧬💻

This four day online workshop will integrate theory and hands-on bioinformatics practice, guiding participants through the complete workflow from Bacterial Whole Genome Sequencing (WGS) to pan-genome construction and interpretation. 💡 The sessions will emphasize real-world applications in clinical diagnostics, antimicrobial resistance, and biotechnology industries.

𝑩𝒚 𝒕𝒉𝒆 𝒆𝒏𝒅 𝒐𝒇 𝒕𝒉𝒆 𝒘𝒐𝒓𝒌𝒔𝒉𝒐𝒑, 𝒑𝒂𝒓𝒕𝒊𝒄𝒊𝒑𝒂𝒏𝒕𝒔 𝒘𝒊𝒍𝒍 𝒃𝒆 𝒂𝒃𝒍𝒆 𝒕𝒐:
- Understand how NGS data contributes to pan-genome studies.
- Perform basic genome assembly, annotation, clustering, and pan-genome construction
- Interpret gene presence/absence matrices and phylogenetic outputs.
- Apply concepts to case studies in clinical, research, and industrial contexts.

📅 𝐃𝐚𝐭𝐞: December 7, 2026 - December 10, 2026
🕒 𝐓𝐢𝐦𝐞: 8:00 PM IST | 8:30 AM CST
📍 𝐋𝐨𝐜𝐚𝐭𝐢𝐨𝐧: Online

🔗 For more information on workshop structure, curriculum, and training resources, register here: https://forms.gle/JcJBNpX4rPVau8BZ9

#PanGenome #Genomics #Bioinformatics #WGS #BacterialGenomics #Training #NGS #AntimicrobialResistance #PhylogeneticAnalysis #Workshop #Certification #AMR by @omics_logic

🧬 Not all genetic variants tell the same story. In cancer genomics, understanding which mutations matter, what they mean, and how they may influence treatment decisions is a crucial part of connecting genomic data with clinical insights.

🔬 This is where resources like ClinVar, OncoKB, COSMIC, and CIViC come in. From cataloguing cancer-associated mutations to connecting variants with clinical evidence and therapeutic relevance, these databases help researchers make sense of complex genomic information and contribute to advances in precision oncology.

Join our 𝟒-𝐃𝐚𝐲 𝐇𝐚𝐧𝐝𝐬-𝐎𝐧 𝐎𝐧𝐥𝐢𝐧𝐞 𝐖𝐨𝐫𝐤𝐬𝐡𝐨𝐩 𝐨𝐧 𝐂𝐚𝐧𝐜𝐞𝐫 𝐍𝐆𝐒: 𝐅𝐫𝐨𝐦 𝐒𝐚𝐦𝐩𝐥𝐞 𝐭𝐨 𝐓𝐮𝐦𝐨𝐫 𝐁𝐨𝐚𝐫𝐝! 🧬🎗️

A tumor biopsy and a treatment decision are separated by a laboratory, a bioinformatics pipeline and a clinical interpretation framework. Most training covers only one of these. This workshop covers all three, using real lung, breast and colon cancer cases that you follow from sample to report. 🔬

Across four live, hands-on sessions, you’ll learn how NGS data is generated and quality-checked. You’ll then run your own somatic variant calling pipeline on Galaxy, with no coding required, and take raw reads all the way to an annotated, filtered VCF.
📊

📅 𝐃𝐚𝐭𝐞: December 14 - 17, 2026
🕒 𝐓𝐢𝐦𝐞: 8:00 PM IST | 8:30 AM CST
💻 𝐅𝐨𝐫𝐦𝐚𝐭: Live + Hands-on
🔗 𝐑𝐞𝐠𝐢𝐬𝐭𝐞𝐫 𝐡𝐞𝐫𝐞: https://forms.gle/xuiaPUTW7m3TMWf49

#CancerGenomics #PrecisionOncology #NGS #Bioinformatics #VariantCalling #ClinicalGenomics #TumorBoard by @omics_logic

🧬 𝐄𝐯𝐞𝐫𝐲 𝐄𝐱𝐨𝐦𝐞 𝐇𝐢𝐝𝐞𝐬 𝐚 𝐍𝐞𝐞𝐝𝐥𝐞 𝐢𝐧 𝐚 𝐇𝐚𝐲𝐬𝐭𝐚𝐜𝐤. 𝐋𝐞𝐚𝐫𝐧 𝐭𝐨 𝐅𝐢𝐧𝐝 𝐈𝐭, 𝐃𝐞𝐟𝐞𝐧𝐬𝐢𝐛𝐥𝐲

40,000–70,000 variants. A handful that matter. And a classification framework that's easy to run through a tool and hard to actually defend. Our 3-Day Hands-On Online 𝐂𝐥𝐢𝐧𝐢𝐜𝐚𝐥 𝐕𝐚𝐫𝐢𝐚𝐧𝐭 𝐈𝐧𝐭𝐞𝐫𝐩𝐫𝐞𝐭𝐚𝐭𝐢𝐨𝐧 & 𝐀𝐂𝐌𝐆 𝐂𝐥𝐚𝐬𝐬𝐢𝐟𝐢𝐜𝐚𝐭𝐢𝐨𝐧 workshop closes that gap, not with more software, but with the judgment to know when software isn't enough.

🔍 𝐈𝐧𝐬𝐢𝐝𝐞 𝐭𝐡𝐞 𝐰𝐨𝐫𝐤𝐬𝐡𝐨𝐩:

→ Turn an annotated exome into a real evidence file: VEP, gnomAD, ClinVar, MANE Select, done right

→ Score all 28 ACMG/AMP criteria by hand, including the PVS1 decision tree and PM2 downgrade logic

→ Know exactly where an automated classifier is safe to trust and where it isn't

→ Classify CNVs under their own ACMG/ClinGen dosage framework

→ Take three real clinical cases from raw call to a report that holds up under audit

No coding. No command line. Just spreadsheets, evidence, and the reasoning behind every classification you'll ever have to defend.

🔗 𝐑𝐞𝐠𝐢𝐬𝐭𝐞𝐫: https://forms.gle/qGhazrEtPs1xyFty7

📅 November 9–12, 2026 | 7:00 PM IST | 8:30 AM CDT

For clinical geneticists, genetic counsellors, molecular pathologists, lab directors, clinical bioinformaticians, and MSc/PhD students in medical genetics.

#ClinicalGenomics #ACMGAMP #VariantClassification #GeneticCounseling #ClinicalBioinformatics by @omics_logic

🌱 𝗨𝗻𝗹𝗼𝗰𝗸 𝘁𝗵𝗲 𝗽𝗼𝘄𝗲𝗿 𝗼𝗳 𝘁𝗿𝗮𝗻𝘀𝗰𝗿𝗶𝗽𝘁𝗼𝗺𝗶𝗰𝘀 and gain hands-on experience in 𝗥𝗡𝗔-𝗦𝗲𝗾 𝗗𝗮𝘁𝗮 𝗔𝗻𝗮𝗹𝘆𝘀𝗶𝘀 𝗳𝗼𝗿 𝗣𝗹𝗮𝗻𝘁 𝗕𝗶𝗼𝘁𝗲𝗰𝗵𝗻𝗼𝗹𝗼𝗴𝘆 𝘂𝘀𝗶𝗻𝗴 𝗥 𝗣𝗿𝗼𝗴𝗿𝗮𝗺𝗺𝗶𝗻𝗴!

Join our 𝟰-𝗱𝗮𝘆 𝗹𝗶𝘃𝗲 𝗼𝗻𝗹𝗶𝗻𝗲 𝘄𝗼𝗿𝗸𝘀𝗵𝗼𝗽 designed to take you through an end-to-end RNA-Seq workflow for plant stress research. Learn how to process raw sequencing data, perform differential expression analysis, visualize results, and derive meaningful biological insights using industry-relevant tools and R packages.

🔬 𝗪𝗵𝗮𝘁 𝘆𝗼𝘂’𝗹𝗹 𝗹𝗲𝗮𝗿𝗻:
✅ RNA-Seq experimental design and data preparation
✅ Read alignment, quantification, and normalization
✅ Differential expression analysis with 𝗗𝗘𝗦𝗲𝗾𝟮 & 𝗲𝗱𝗴𝗲𝗥
✅ Volcano plots, heatmaps, and transcriptomic data visualization
✅ Pathway enrichment and gene ontology analysis
✅ Biological interpretation of stress-responsive genes

📅 𝗗𝗮𝘁𝗲𝘀: November 30 - December 3, 2026
⏰ 𝗧𝗶𝗺𝗲: 7:30 PM IST | 8:00 AM CST
💻 𝗙𝗼𝗿𝗺𝗮𝘁: Live + Hands-on Online Workshop
🔗 𝗥𝗲𝗴𝗶𝘀𝘁𝗲𝗿 𝗡𝗼𝘄: https://forms.gle/4bSsNJhZSLhVKsWG7

🎯 Ideal for students, researchers, plant scientists, and professionals looking to strengthen their RNA-Seq and transcriptomics analysis skills.

#Bioinformatics #RNASeq #Transcriptomics #PlantScience #RProgramming #DataAnalysis #LifeSciences #PlantResearch #OmicsLogic by @omics_logic

🚀 𝐎𝐦𝐢𝐜𝐬𝐋𝐨𝐠𝐢𝐜 𝐁𝐢𝐨𝐦𝐞𝐝𝐢𝐜𝐚𝐥 𝐃𝐚𝐭𝐚 𝐒𝐜𝐢𝐞𝐧𝐜𝐞 𝐔𝐬𝐢𝐧𝐠 𝐑 𝐏𝐫𝐨𝐠𝐫𝐚𝐦: a practical learning journey into bioinformatics, statistical analysis, data visualization, and machine learning using R. 🧬📊💻

From handling biological datasets to uncovering meaningful insights through advanced analytics, this program is designed to help learners build strong computational skills for modern biomedical research.

Whether you're a beginner exploring R for the first time or a researcher looking to strengthen your data analysis workflows, this training provides hands-on exposure to real-world biomedical data science applications.

Designed for 𝐮𝐧𝐝𝐞𝐫𝐠𝐫𝐚𝐝𝐮𝐚𝐭𝐞𝐬, 𝐩𝐨𝐬𝐭𝐠𝐫𝐚𝐝𝐮𝐚𝐭𝐞𝐬, 𝐟𝐚𝐜𝐮𝐥𝐭𝐲, 𝐬𝐜𝐢𝐞𝐧𝐭𝐢𝐬𝐭𝐬, 𝐚𝐧𝐝 𝐫𝐞𝐬𝐞𝐚𝐫𝐜𝐡𝐞𝐫𝐬 who want industry-relevant skills in bioinformatics and biomedical data analysis.

📚 𝐂𝐮𝐫𝐫𝐢𝐜𝐮𝐥𝐮𝐦 𝐎𝐯𝐞𝐫𝐯𝐢𝐞𝐰

🔰 𝐁𝐄𝐆𝐈𝐍𝐍𝐄𝐑 𝐋𝐄𝐕𝐄𝐋
-Introduction to R, RStudio & biomedical data handling
-Data cleaning, manipulation & visualization using tidyverse and ggplot2
-Descriptive statistics, exploratory analysis & hypothesis testing
-Dimensionality reduction techniques including PCA and t-SNE

⚙️ 𝐈𝐍𝐄𝐑𝐌𝐄𝐃𝐈𝐀𝐓𝐄 𝐋𝐄𝐕𝐄𝐋
-Sequence alignment, phylogenetic analysis & variant analysis workflows
-16S metagenomics analysis and microbiome profiling using DADA2
-Differential gene expression analysis using DESeq2
-Single-cell RNA-seq analysis using Seurat and SingleR

🚀 𝐀𝐃𝐕𝐀𝐍𝐂𝐄𝐃 𝐋𝐄𝐕𝐄𝐋
-Machine learning fundamentals for biomedical datasets in R
-Feature selection and dimensionality reduction for genomic data
-Supervised & unsupervised learning techniques including clustering and SVMs
-Model evaluation, biomarker discovery & biological interpretation workflows

🔗 𝐑𝐞𝐠𝐢𝐬𝐭𝐞𝐫 𝐭𝐨 𝐚𝐜𝐜𝐞𝐬𝐬 𝐭𝐡𝐞 𝐜𝐨𝐦𝐩𝐥𝐞𝐭𝐞 𝐜𝐮𝐫𝐫𝐢𝐜𝐮𝐥𝐮𝐦 𝐚𝐧𝐝 𝐫𝐞𝐜𝐞𝐢𝐯𝐞 𝐚𝐬𝐬𝐢𝐬𝐭𝐚𝐧𝐜𝐞 𝐟𝐫𝐨𝐦 𝐨𝐮𝐫 𝐭𝐞𝐚𝐦:
https://forms.gle/Bz6HndM8pXyZvBvs9

#BiomedicalDataScience #Bioinformatics #RProgramming #DataScience #MachineLearning #SingleCellRNAseq #Metagenomics #DESeq2 #Bioconductor #OmicsLogic by @omics_logic

A tissue biopsy provides detailed information directly from the tumor but often requires an invasive procedure and captures only a single point in time.

A liquid biopsy, on the other hand, analyzes tumor-derived biomarkers like ctDNA from a simple blood sample. It enables minimally invasive, real-time monitoring of treatment response, disease progression, and recurrence.

As precision oncology advances, 𝐥𝐢𝐪𝐮𝐢𝐝 𝐛𝐢𝐨𝐩𝐬𝐲 𝐢𝐬 𝐭𝐫𝐚𝐧𝐬𝐟𝐨𝐫𝐦𝐢𝐧𝐠 𝐡𝐨𝐰 𝐰𝐞 𝐦𝐨𝐧𝐢𝐭𝐨𝐫 𝐜𝐚𝐧𝐜𝐞𝐫—making it possible to track tumor dynamics over time without repeated invasive procedures.

Join our 𝟒-𝐃𝐚𝐲 𝐇𝐚𝐧𝐝𝐬-𝐎𝐧 𝐎𝐧𝐥𝐢𝐧𝐞 𝐖𝐨𝐫𝐤𝐬𝐡𝐨𝐩 𝐨𝐧 𝐋𝐢𝐪𝐮𝐢𝐝 𝐁𝐢𝐨𝐩𝐬𝐲 – 𝐜𝐭𝐃𝐍𝐀 𝐃𝐚𝐭𝐚 𝐀𝐧𝐚𝐥𝐲𝐬𝐢𝐬 and learn how to transform circulating tumor DNA (ctDNA) sequencing data into actionable clinical insights through a complete hands-on bioinformatics workflow. This workshop is designed to help participants confidently analyze liquid biopsy datasets, from raw sequencing reads to biomarker discovery and clinical interpretation.

🔗 𝑭𝒐𝒓 𝒘𝒐𝒓𝒌𝒔𝒉𝒐𝒑 𝒅𝒆𝒕𝒂𝒊𝒍𝒔 𝒂𝒏𝒅 𝒓𝒆𝒈𝒊𝒔𝒕𝒓𝒂𝒕𝒊𝒐𝒏:
https://forms.gle/kwSd3SvYAivZwnQs8

🔄 Share this post with colleagues, students, and researchers interested in liquid biopsy, cancer genomics, and precision medicine.

#LiquidBiopsy #ctDNA #cfDNA #CancerGenomics #PrecisionOncology #NGS #Bioinformatics #Genomics #ClinicalResearch #DataAnalysis by @omics_logic

Once you’ve called variants, the real question begins: what do they mean? 🧬

Tools like VEP, ANNOVAR, and SnpEff turn raw VCF files into biological insight—annotating variants with gene impact, clinical relevance, and population data.

But annotation isn’t just adding labels—it’s interpreting consequences.
From benign changes to disease-causing mutations, this step defines the story your data tells.

𝙇𝙚𝙖𝙧𝙣 𝙝𝙤𝙬 𝙩𝙤 𝙩𝙪𝙧𝙣 𝙨𝙚𝙦𝙪𝙚𝙣𝙘𝙞𝙣𝙜 𝙙𝙖𝙩𝙖 𝙞𝙣𝙩𝙤 𝙧𝙚𝙖𝙡-𝙬𝙤𝙧𝙡𝙙 𝙞𝙢𝙥𝙖𝙘𝙩 — 𝙖𝙣𝙙 𝙤𝙥𝙚𝙣 𝙙𝙤𝙤𝙧𝙨 𝙩𝙤 𝙘𝙖𝙧𝙚𝙚𝙧𝙨 𝙨𝙝𝙖𝙥𝙞𝙣𝙜 𝙩𝙝𝙚 𝙛𝙪𝙩𝙪𝙧𝙚 𝙤𝙛 𝙝𝙚𝙖𝙡𝙩𝙝𝙘𝙖𝙧𝙚.

Join our 𝟒-𝐃𝐚𝐲 𝐇𝐚𝐧𝐝𝐬-𝐎𝐧 𝐎𝐧𝐥𝐢𝐧𝐞 𝐖𝐨𝐫𝐤𝐬𝐡𝐨𝐩 𝐨𝐧 𝐂𝐚𝐧𝐜𝐞𝐫 𝐍𝐆𝐒: 𝐅𝐫𝐨𝐦 𝐒𝐚𝐦𝐩𝐥𝐞 𝐭𝐨 𝐓𝐮𝐦𝐨𝐫 𝐁𝐨𝐚𝐫𝐝! 🧬🎗️

A tumor biopsy and a treatment decision are separated by a laboratory, a bioinformatics pipeline and a clinical interpretation framework. Most training covers only one of these. This workshop covers all three, using real lung, breast and colon cancer cases that you follow from sample to report. 🔬

Across four live, hands-on sessions, you’ll learn how NGS data is generated and quality-checked. You’ll then run your own somatic variant calling pipeline on Galaxy, with no coding required, and take raw reads all the way to an annotated, filtered VCF.
📊

📅 𝐃𝐚𝐭𝐞: December 14 - 17, 2026
🕒 𝐓𝐢𝐦𝐞: 8:00 PM IST | 8:30 AM CST
💻 𝐅𝐨𝐫𝐦𝐚𝐭: Live + Hands-on
🔗 𝐑𝐞𝐠𝐢𝐬𝐭𝐞𝐫 𝐡𝐞𝐫𝐞: https://forms.gle/xuiaPUTW7m3TMWf49

#CancerGenomics #PrecisionOncology #NGS #Bioinformatics #VariantCalling #ClinicalGenomics #TumorBoard by @omics_logic

Liked by tranquil_scientist and 6 others
The future of genomics is LONG. Are you ready? Long-read sequencing is no longer just for specialist labs — and now YOU can master it! 💪

𝟒-𝐃𝐚𝐲 𝐇𝐚𝐧𝐝𝐬-𝐎𝐧 𝐎𝐧𝐥𝐢𝐧𝐞: 𝐋𝐨𝐧𝐠-𝐑𝐞𝐚𝐝 𝐒𝐞𝐪𝐮𝐞𝐧𝐜𝐢𝐧𝐠 𝐃𝐚𝐭𝐚 𝐀𝐧𝐚𝐥𝐲𝐬𝐢𝐬 (𝐍𝐚𝐧𝐨𝐩𝐨𝐫𝐞 & 𝐏𝐚𝐜𝐁𝐢𝐨) 𝐖𝐨𝐫𝐤𝐬𝐡𝐨𝐩!

Participants will gain the ability to evaluate and compare sequencing platforms, retrieve and assess public long-read datasets, perform quality control and filtering, align reads to a reference genome, and visualize genomic features and structural variant signatures.

🔥 By the end of the workshop, participants will be able to interpret structural variant calls and connect these analysis skills to real-world clinical applications in rare disease diagnostics, cancer genomics, pharmacogenomics, and infectious disease surveillance.

📅 𝐃𝐚𝐭𝐞: December 14 - December 17, 2026
🕒 𝐓𝐢𝐦𝐞: 7:30 PM IST | 8:00 AM CST
📍 𝐋𝐨𝐜𝐚𝐭𝐢𝐨𝐧: Online

🔗 For more information on the workshop structure, curriculum, and training resources, register here: https://forms.gle/jSRQi3h8bzExsx2q7

#LongReadSequencing #Genomics #PrecisionMedicine #Bioinformatics #LifeSciences by @omics_logic

Computational pathology brings data science into the microscope’s field of view 🔬💻It uses AI and advanced image analysis to extract patterns from digital slides that the human eye can’t easily quantify. From tumor detection to biomarker scoring, it turns pixels into measurable insight.

The result? Faster workflows, greater precision, and more informed clinical decisions.

To translate these concepts into real, hands-on skills, we’re hosting:

🧬 𝟐-𝐖𝐞𝐞𝐤𝐞𝐧𝐝 𝐇𝐚𝐧𝐝𝐬-𝐎𝐧 𝐎𝐧𝐥𝐢𝐧𝐞 𝐖𝐨𝐫𝐤𝐬𝐡𝐨𝐩: 𝐀𝐩𝐩𝐥𝐢𝐞𝐝 𝐂𝐨𝐦𝐩𝐮𝐭𝐚𝐭𝐢𝐨𝐧𝐚𝐥 𝐏𝐚𝐭𝐡𝐨𝐥𝐨𝐠𝐲: 𝐇𝐚𝐧𝐝𝐬-𝐎𝐧 𝐈𝐦𝐚𝐠𝐞 𝐀𝐧𝐚𝐥𝐲𝐬𝐢𝐬, 𝐁𝐢𝐨𝐦𝐚𝐫𝐤𝐞𝐫 𝐒𝐜𝐨𝐫𝐢𝐧𝐠 & 𝐌𝐋

OmicsLogic and MedAIQ bring you a practical, research-ready workshop designed to help participants transform H&E, IHC, and IF whole slide images (WSI) into quantitative, reproducible insights using Python-based digital pathology workflows in Google Colab.

Over three live sessions across two weekends, participants work through the complete image analysis pipeline: WSI handling and slide QC, stain separation and normalization, segmentation, deep-learning cell detection with Cellpose, biomarker scoring (Ki-67, ER/PR, H-score), and machine learning for tissue classification and spatial analysis.

Between the weekends, you apply what you've learned to a guided mini-project, then present it at a Project Clinic for expert feedback from the mentor. You leave with a portfolio-ready project and a clear path to grow it into publishable research.

🔗 𝐑𝐞𝐠𝐢𝐬𝐭𝐞𝐫 𝐡𝐞𝐫𝐞: https://forms.gle/3qfa5XhLnKUFHy4LA

🔄 Share this with your friends, colleagues, and peers who may be interested in computational pathology and AI-ready digital slide analysis.

#ComputationalPathology #DigitalPathology #AIinHealthcare #Bioinformatics #ImageAnalysis #Python #MachineLearning by @omics_logic

𝟒-𝐃𝐚𝐲 𝐇𝐚𝐧𝐝𝐬-𝐎𝐧 𝐎𝐧𝐥𝐢𝐧𝐞 𝐖𝐨𝐫𝐤𝐬𝐡𝐨𝐩: 𝐏𝐚𝐧-𝐆𝐞𝐧𝐨𝐦𝐞 𝐀𝐧𝐚𝐥𝐲𝐬𝐢𝐬 (𝐁𝐚𝐜𝐭𝐞𝐫𝐢𝐚𝐥 𝐖𝐡𝐨𝐥𝐞 𝐆𝐞𝐧𝐨𝐦𝐞 𝐒𝐞𝐪𝐮𝐞𝐧𝐜𝐢𝐧𝐠, 𝐀𝐧𝐭𝐢𝐦𝐢𝐜𝐫𝐨𝐛𝐢𝐚𝐥 𝐑𝐞𝐬𝐢𝐬𝐭𝐚𝐧𝐜𝐞, 𝐂𝐥𝐢𝐧𝐢𝐜𝐚𝐥 𝐃𝐢𝐚𝐠𝐧𝐨𝐬𝐭𝐢𝐜𝐬) 🧬💻

This four day online workshop will integrate theory and hands-on bioinformatics practice, guiding participants through the complete workflow from Bacterial Whole Genome Sequencing (WGS) to pan-genome construction and interpretation. 💡 The sessions will emphasize real-world applications in clinical diagnostics, antimicrobial resistance, and biotechnology industries.

𝑩𝒚 𝒕𝒉𝒆 𝒆𝒏𝒅 𝒐𝒇 𝒕𝒉𝒆 𝒘𝒐𝒓𝒌𝒔𝒉𝒐𝒑, 𝒑𝒂𝒓𝒕𝒊𝒄𝒊𝒑𝒂𝒏𝒕𝒔 𝒘𝒊𝒍𝒍 𝒃𝒆 𝒂𝒃𝒍𝒆 𝒕𝒐:
- Understand how NGS data contributes to pan-genome studies.
- Perform basic genome assembly, annotation, clustering, and pan-genome construction
- Interpret gene presence/absence matrices and phylogenetic outputs.
- Apply concepts to case studies in clinical, research, and industrial contexts.

📅 𝐃𝐚𝐭𝐞: December 7, 2026 - December 10, 2026
🕒 𝐓𝐢𝐦𝐞: 8:00 PM IST | 8:30 AM CST
📍 𝐋𝐨𝐜𝐚𝐭𝐢𝐨𝐧: Online

🔗 For more information on workshop structure, curriculum, and training resources, register here: https://forms.gle/JcJBNpX4rPVau8BZ9

#PanGenome #Genomics #Bioinformatics #WGS #BacterialGenomics #Training #NGS #AntimicrobialResistance #PhylogeneticAnalysis #Workshop #Certification #AMR by @omics_logic

𝟒-𝐃𝐚𝐲 𝐇𝐚𝐧𝐝𝐬-𝐎𝐧 𝐎𝐧𝐥𝐢𝐧𝐞 𝐌𝐞𝐧𝐭𝐨𝐫-𝐆𝐮𝐢𝐝𝐞𝐝 𝐖𝐨𝐫𝐤𝐬𝐡𝐨𝐩 𝐨𝐧 𝐏𝐫𝐨𝐭𝐞𝐨𝐦𝐢𝐜 & 𝐌𝐞𝐭𝐚𝐛𝐨𝐥𝐨𝐦𝐢𝐜 𝐁𝐢𝐨𝐦𝐚𝐫𝐤𝐞𝐫𝐬 𝐢𝐧 𝐏𝐫𝐞𝐜𝐢𝐬𝐢𝐨𝐧 𝐎𝐧𝐜𝐨𝐥𝐨𝐠𝐲, in collaboration with 𝐒𝐰𝐚𝐬𝐭𝐨𝐦𝐞

This four-day workshop follows one brain tumor cohort through the full biomarker pipeline: LC-MS/MS discovery, ML-based panel selection, PRM/MRM validation, and clinical translation.

🧬🔬 Participants will learn how proteins, peptides, and metabolites reveal tumor biology that genomics alone misses, and how a candidate molecule becomes a cancer test that guides diagnosis and targeted therapy.

𝐖𝐡𝐚𝐭 𝐖𝐞’𝐥𝐥 𝐂𝐨𝐯𝐞𝐫:
-Understand LC-MS/MS principles, DDA vs DIA, and proteomics/metabolomics identification.
-Run tumor-vs-control analysis with normalization, volcano plots, and PCA.
-Build a 5–10 marker panel using PLS-DA and Random Forest with proper cross-validation.
-Design targeted PRM/MRM assays in Skyline and draft a transition list.
-Score a validation cohort with ROC/AUC and choose a clinical cut-off.

📅 𝐃𝐚𝐭𝐞𝐬: December 5–6 & 12–13, 2026
🕒 𝐓𝐢𝐦𝐞: 8:30 PM IST | 9:00 AM CST
🌎 𝐋𝐨𝐜𝐚𝐭𝐢𝐨𝐧: Online
🔗 𝗙𝗼𝗿 𝗺𝗼𝗿𝗲 𝗶𝗻𝗳𝗼𝗿𝗺𝗮𝘁𝗶𝗼𝗻 𝗼𝗻 𝘄𝗼𝗿𝗸𝘀𝗵𝗼𝗽 𝘀𝘁𝗿𝘂𝗰𝘁𝘂𝗿𝗲, 𝗰𝘂𝗿𝗿𝗶𝗰𝘂𝗹𝘂𝗺, 𝗮𝗻𝗱 𝘁𝗿𝗮𝗶𝗻𝗶𝗻𝗴 𝗿𝗲𝘀𝗼𝘂𝗿𝗰𝗲𝘀, 𝗿𝗲𝗴𝗶𝘀𝘁𝗲𝗿 𝗵𝗲𝗿𝗲: https://forms.gle/wnvAhHa2LFytRyP39

#Proteomics #Metabolomics #PrecisionOncology #BiomarkerDiscovery #MassSpectrometry by @omics_logic